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Seriously, though. In my opinion, V is by far the worst TOS film, if not the worst of any Star Trek film (Yes, including Kelvin), yet it somehow nailed the ending.
Not to say I hated V that much. I think there's some charm of Kirk, Spock, and Bones breaking out the brig, but the plot is catastrophically bad. I was also annoyed with that one scene with Uhura where they have her seduce some acolytes, which I feel is a disgrace to the character.
In Cogenitor, Starfleet wouldn't get very far if it had to roll up to every first contact demanding a species conform to human morality. It has to take a neutral position or first contact becomes an ultimatum. That doesn't mean Starfleet is pro-slavery, it just means it recognizes that it's not in a position to force that change on a species it met five seconds ago. Now if the species was trying to join the Federation (down the line) obviously that's a different story...
The Orion episode too... Uh, weren't the "slaves" actually just pirates? Can we trust anything said when it was just a setup to steal the ship? Not to mention that just because a character says something doesn't make it true or reflect the morality of the show/writers. Maybe that Orion is just an idiot or rationalizing his shitty behavior...